Oehlenschläger, J. Seafood: Nutritional benefits and risk aspects. Int. J. Vitam. Nutr. Res. 82, 168–176 (2012).

Article 
PubMed 

Google Scholar 

McManus, A. & Newton, W. Seafood, Nutrition and Human Health: A Synopsis of the Nutritional Benefits of Consuming Seafood (2011).

Rimm, E. B. et al. Seafood long-chain n-3 polyunsaturated fatty acids and cardiovascular disease: A science advisory from the American Heart Association. Circulation 138, e35–e47 (2018).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Ouellet, V., Marois, J., Weisnagel, S. J. & Jacques, H. Dietary cod protein improves insulin sensitivity in insulin-resistant men and women: A randomized controlled trial. Diabet. Care 30, 2816–2821 (2007).

Article 
CAS 

Google Scholar 

Rudkowska, I. et al. Fish nutrients decrease expression levels of tumor necrosis factor-α in cultured human macrophages. Physiol. Genom. 40, 189–194 (2010).

Article 
CAS 

Google Scholar 

Ait-Yahia, D. et al. Dietary fish protein lowers blood pressure and alters tissue polyunsaturated fatty acid composition in spontaneously hypertensive rats. Nutrition 19, 342–346 (2003).

Article 
CAS 
PubMed 

Google Scholar 

Chen, P. Y. et al. Investigating seafood substitution problems and consequences in Taiwan using molecular barcoding and deep microbiome profiling. Sci. Rep. 10, 21997 (2020).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Browne, H. P., Neville, B. A., Forster, S. C. & Lawley, T. D. Transmission of the gut microbiota: Spreading of health. Nat. Rev. Microbiol. 15, 531–543 (2017).

Article 
PubMed 
PubMed Central 

Google Scholar 

Nawa, Y., Hatz, C. & Blum, J. Sushi delights and parasites: The risk of fishborne and foodborne parasitic zoonoses in Asia. Clini. Infect. Dis. 41, 1297–1303 (2005).

Article 

Google Scholar 

USFDA. Fish and Fishery Products Hazards and Controls Guidance.

Alegria, S. J. C. et al. Assessment of the microbiological quality and safety in Takeaway Sushi Meals in Portugal. Port. J. Public Health 40, 69–80 (2022).

Article 

Google Scholar 

Konopka, A. What is microbial community ecology?. ISME J. 3, 1223–1230 (2009).

Article 
PubMed 

Google Scholar 

Hou, K. et al. Microbiota in health and diseases. Signal Transduct. Target Ther. 7, 135 (2022).

Article 
PubMed 
PubMed Central 

Google Scholar 

Nam, N. N., Do, H. D. K., Loan Trinh, K. T. & Lee, N. Y. Metagenomics: An effective approach for exploring microbial diversity and functions. Foods 12, 66 (2023).

Article 

Google Scholar 

Tseng, C.-H. & Tang, S.-L. Marine microbial metagenomics: From individual to the environment. Int. J. Mol. Sci. 15, 8878–8892 (2014).

Article 
PubMed 
PubMed Central 

Google Scholar 

Tully, B. J., Graham, E. D. & Heidelberg, J. F. The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans. Sci. Data 5, 170203 (2018).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Pratte, Z. A., Besson, M., Hollman, R. D. & Stewart, F. J. The gills of reef fish support a distinct microbiome influenced by host-specific factors. Appl. Environ. Microbiol. 84, 66 (2018).

Article 

Google Scholar 

Hebert, P. D., Cywinska, A., Ball, S. L. & Dewaard, J. R. Biological identifications through DNA barcodes. Proc. R. Soc. Lond. Ser. B Biol. Sci. 270, 313–321 (2003).

Article 
CAS 

Google Scholar 

Kress, W. J. & Erickson, D. L. DNA barcodes: methods and protocols. in DNA Barcodes 3–8 (Springer, 2012).

Xia, Y. et al. COI is better than 16S rRNA for DNA barcoding Asiatic salamanders (Amphibia: Caudata: Hynobiidae). Mol. Ecol. Resour. 12, 48–56 (2012).

Article 
CAS 
PubMed 

Google Scholar 

Berg, G. et al. Microbiome definition re-visited: Old concepts and new challenges. Microbiome 8, 1–22 (2020).

Google Scholar 

Ratnasingham, S. & Hebert, P.D.N. BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes 7, 355–364 (2007).

Ratnasingham, S. & Hebert, P. D. N. A DNA-based registry for all animal species: The Barcode Index Number (BIN) system. PLoS ONE 8, e66213 (2013).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Anagnostopoulos, D. A., Parlapani, F. F. & Boziaris, I. S. The evolution of knowledge on seafood spoilage microbiota from the 20th to the 21st century: Have we finished or just begun?. Trends Food Sci. Technol. 120, 236–247 (2022).

Article 
CAS 

Google Scholar 

Van de Peer, Y. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res. 24, 3381–3391 (1996).

Article 
PubMed 
PubMed Central 

Google Scholar 

Klindworth, A. et al. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41, e1–e1 (2013).

Article 
CAS 
PubMed 

Google Scholar 

Magoč, T. & Salzberg, S. L. FLASH: Fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957–2963 (2011).

Article 
PubMed 
PubMed Central 

Google Scholar 

Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C. & Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194–2200 (2011).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Edgar, R. C. UPARSE: Highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996–998 (2013).

Article 
CAS 
PubMed 

Google Scholar 

Morgan, X. C. & Huttenhower, C. A. Chapter 12: Human microbiome analysis. PLoS Comput. Biol. 8, e1002808 (2012).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Wang, Q., Garrity, G. M., Tiedje, J. M. & Cole, J. R. Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl. Environ. Microbiol. 73, 5261–5267 (2007).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Almasaudi, S. B. Acinetobacter spp. as nosocomial pathogens: Epidemiology and resistance features. Saudi J. Biol. Sci. 25, 586–596 (2018).

Article 
PubMed 

Google Scholar 

Martinez, V., Matabang, M. A., Miller, D., Aggarwal, R. & LaFortune, A. First case report on Empedobacter falsenii bacteremia. IDCases 33, e01814 (2023).

Article 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Lin, M., Zhang, C., Gibson, K. & Rikihisa, Y. Analysis of complete genome sequence of Neorickettsia risticii: Causative agent of Potomac horse fever. Nucleic Acids Res, 37, 6076–6091 (2009).

Article 
CAS 
PubMed 

Google Scholar 

Buyukcam, A. et al. Clinical and microbiological characteristics of Pantoea agglomerans infection in children. J. Infect. Public Health 11, 304–309 (2018).

Article 
PubMed 

Google Scholar 

Skane, A. et al. Chitinolytic enzymes contribute to the pathogenicity of Aliivibrio salmonicida LFI1238 in the invasive phase of cold-water vibriosis. BMC Microbiol. 22, 194 (2022).

Article 
PubMed 
PubMed Central 

Google Scholar 

Crump, E. M., Perry, M. B., Clouthier, S. C. & Kay, W. W. Antigenic characterization of the fish pathogen Flavobacterium psychrophilum. Appl. Environ. Microbiol. 67, 750–759 (2001).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Riley, M. et al. Genomics of an extreme psychrophile, Psychromonas ingrahamii. BMC Genomics 9, 210 (2008).

Article 
PubMed 
PubMed Central 

Google Scholar 

Moeller, A. H. et al. Cospeciation of gut microbiota with hominids. Science 353, 380–382 (2016).

Article 
ADS 
CAS 
PubMed 
PubMed Central 

Google Scholar 

Urbanczyk, H., Ast, J. C. & Dunlap, P. V. Phylogeny, genomics, and symbiosis of Photobacterium. FEMS Microbiol. Rev. 35, 324–342 (2011).

Article 
CAS 
PubMed 

Google Scholar 

Jerome, M., Mace, S., Dousset, X., Pot, B. & Joffraud, J. J. Genetic diversity analysis of isolates belonging to the Photobacterium phosphoreum species group collected from salmon products using AFLP fingerprinting. Int. J. Food. Microbiol. 217, 101–109 (2016).

Article 
CAS 
PubMed 

Google Scholar 

Kuuliala, L. et al. Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod (Gadus morhua) stored under modified atmospheres. Food Microbiol. 70, 232–244 (2018).

Article 
CAS 
PubMed 

Google Scholar 

Tsoukalas, D., Hoel, S., Lerfall, J. & Jakobsen, A. N. Photobacterium predominate the microbial communities of muscle of European plaice (Pleuronectes platessa) caught in the Norwegian sea independent of skin and gills microbiota, fishing season, and storage conditions. Int. J. Food Microbiol. 397, 110222 (2023).

Article 
PubMed 

Google Scholar 

Xing, C.-F. et al. Diet supplementation of Pediococcus pentosaceus in cobia (Rachycentron canadum) enhances growth rate, respiratory burst and resistance against photobacteriosis. Fish Shellfish Immunol. 35, 1122–1128 (2013).

Article 
CAS 
PubMed 

Google Scholar 

Kanki, M., Yoda, T., Ishibashi, M. & Tsukamoto, T. Photobacterium phosphoreum caused a histamine fish poisoning incident. Int. J. Food Microbiol. 92, 79–87 (2004).

Article 
CAS 
PubMed 

Google Scholar 

Dalgaard, P., Mejlholm, O., Christiansen, T. & Huss, H. H. Importance of Photobacterium phosphoreum in relation to spoilage of modified atmosphere-packed fish products. Lett. Appl. Microbiol. 24, 373–378 (1997).

Article 

Google Scholar 

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